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Hey folks, I’ve now produced three livestream videos. What do you think? Do you watch them live or watch them later? Or are they too long? I’m looking for honest feedback! I have to admit that if I hadn’t livestreamed these videos, they would not have been produced. It’s nice that I can more or less record and post without any editing. This is still a bit of an experiment. I think fewer people are watching the episodes which makes me worry that this might be an overall step backwards for you all. I want what I do to have maximum benefit, so please don’t hesitate to respond to this email and let me know what you think. Yesterday morning, I received a newsletter from Philip Bump who writes a column for the The Washington Post. He has a couple of newsletters, but this one is an “add on” to his columns where he shares more of the data behind what goes into his columns. Although not overly complicated, I thought this would be a fun “basic” plot for beginners but enough ornamentation for more advanced R users. This plot was an add on to his column on a generational rift in the Democratic Party in the aftermath of the New York City mayoral primary election. In this plot he uses March 2025 data from Gallup to compare how the two parties differ in their support for Israelis versus Palestinans. So, how would I go about making this plot? We need the data. If you go to the Gallup article, the second plot has three tabs. One each for Democrats, Republicans, and Independents. The plots show the percent, by party, who support Israelis or Palestinians. In the lower left corner of the plot is a link to “Get the data”, which downloads a CSV-formatted file for the data in each plot. We’ll need to get both the Democrat and Republican datasets. Also, we’ll need to go back to the first plot and get the data for “All Americans”. For each of these files, we’ll need to read them in and join them into a single tibble. We can read the three files in to a single tibble using Again, at the fundamental level, this is a line plot with three groups. We can do this in Now for the ornamentation. First, the axes will need some help. There are no axis titles or ticks. Those can be removed with Second, the gridline choices are “interesting”. The y-axis gridlines look fairly standard. However, we’ll have to add a thicker black line at zero. For the x-axis gridlines he has one at 2016 and October 7, 2023. We’ll have to make those x-axis gridlines and the zero line using Finally, there is text in the right hand margin indicating what each line represents. We can place the text using All in all, this should be a less intense plot than what I’ve been making lately. At the same time, we get to practice some fun stuff with text. I think it will also give an opportunity to compare how we use
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Hey folks, It’s great to be back sending out this newsletter and posting videos! I hope you had a chance to check out the critique and livestream that I posted earlier this week. To be honest, I almost didn’t cover these figures because I truly strive to be constructive in this newsletter and in my content. Please feel free to email me if you think I should pull together a more formal description of the issues in the original paper to send to the authors before sending out to Nature...
Hey folks, It turns out that I sent out last week’s newsletter a week earlier than I should have. I had every intention of posting a critique video on Monday and doing a livestream on Wednesday. Alas, I didn’t totally have control of my schedule and neither video got up. Regardless, I’m glad I sent the newsletter out last week because it got me going. Inertia is a powerful thing. If we never start - even if it’s a false start - we will never get going. Rest assured that the videos will come...
Hey folks! I’m excited to be firing up the newsletter and YouTube feed again for the academic year. I hope you all had a great summer and were able to get a lot done while enjoying the opportunity to rest a bit. This summer I was able to finally resubmit and publish a manuscript I’ve been working on for a few years to rarefaction. This is now my third paper on rarefaction. Don’t worry, it’s the same story. If you are analyzing microbiome data, please use rarefaction. This paper raised a few...