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Hey folks, I hope you all are doing well as we settle in to 2025. Here in southeastern Michigan winter has settled in. Our high temperatures have been below freezing for the past week and it looks like they will be for at least the next 10 days. Brrrr. Going outside reminds me to be grateful that our furnace works and that we’re able to keep it running. It’s easy to take that for granted. Perhaps this is what people had in mind when they made January, “National Poverty in America Awareness Month”. Looking through the US Census Bureau’s poverty report from last January, I was struck by their Figure 1. The data has a column for the year, the number of people in poverty, and the percentage of people in poverty. We can see that the “War on Poverty”, which started in 1964, continued the downward trend in the rate of poverty. Unfortunately, the rate has oscillated between 10 and 15% for the past 50 years without a further reduction. Beyond the stories the figure tells, I thought there were a number of interesting components to this figure that would be fun to consider in R. First, this is clearly a pair of line plots with the top panel showing the number of people and the bottom panel showing the fraction of people living in poverty by year. We could do this with Second, of course, the top and bottom panels are different colors. But if we’re going to use Third, I noticed that they highlighted when recessions have occurred for the past 65 years. I’m not sure what I’m supposed to see linking recessions to poverty, but they included the information. We can get those dates from Wikipedia. I’d likely generate those light blue rectangles using Fourth, I like how the authors put the number and rate for 2022 in the right-hand margin of the plot. We could pull this off with Fifth, there are several things that we’ve seen recently that we could reimplement here. A few weeks ago we saw a legend with a single variable in it. This figure also has a single variable legend. I think it is useful here. Having the glyph for the fill color to indicate that the color represents when recessions occurred is pretty nice. Also, I’m pretty sure they’re using Libre Franklin as their sans serif font. We could use that font with help from the What don’t I like about this figure? Well, they have a broken y-axis for the number of people in poverty. I think that’s deceiving and not necessary. I’d either leave it “unbroken” or start the y-axis with 20 million. The only time you really need to include zero on the y-axis is for a bar plot. I also find it really challenging to vertically line things up between the two panels. I think vertical grid lines would make things busy. But what if we put major tick marks every five years and shorter tick marks on the individual years? Or what if we dropped them entirely? Finally, I notice that the last year on the x-axis is 2022, which makes sense because it’s the final year. But that creates a weird gap between 2015 and 2022. With longer tick marks every five years, I think it would then become obvious from the smaller tick marks that the plot ends in 2022. Plus it would be in the title. Let me know what you like or don’t like about this figure! Looking at the other figures in the report, which would you like to see me recreate with {ggplot2}?
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Hey folks, It has been great to see the high level of engagement with my weekly critique videos on YouTube. I have really enjoyed making them and have learned a lot about current practices in data visualization. The one problem with these videos is that they’re a bit like an autopsy. We can figure out what went well or what didn’t work in a published figure. But we can’t do much to improve the published figure. What if we could do critiques before submitting our papers, preparing a...
Hey folks, This week I want to share with you a figure that resembles many a type of figure that I see in a lot of genomics papers. I’d consider it a data visualization meme - kind of like how you’re “required” to have a stacked bar plot if you’re doing microbiome research or a dynamite plot if you’re publishing in Nature :) This figure was included in the paper, “Impact of intensive control on malaria population genomics under elimination settings in Southeast Asia” that was published...
Hey folks! I hope you enjoyed last week’s series on the radial volcano plot (newsletter, critique video, livestream). I think it did a good job of illustrating the various reasons I think it’s valuable to recreate figures, even if we don’t like how they display the data. Something I didn’t really emphasize in last week’s newsletter was that by recreating a figure, we can make sure that the data are legit. I’m surprised by the number of signals I’ve been finding where authors using tools like...