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Hey folks, Happy 2025! I really hope that one of your resolutions for the coming year is to grow in confidence and skill using data analysis tools like R. Regardless, I’m honored that you continue to check out the content I describe here in the newsletter and on my YouTube channel. Thank you. Looking back on my 2024, I did a lot of thinking about how we learn, where I find inspirations, and how I teach. I have been fascinated by other YouTube channels that break down why songs are great, the techniques of different directors, recreating scenes from movies, and describe how to recreate drawings and paintings. So why not look at why data visuals are great and how we can recreate them with our tools? This is what I’ve been doing since August. I’ve really loved describing my thought process from a 30,000-foot view and then implementing that view on YouTube. Of course, the goal isn’t to recreate other people’s visuals and end there. It’s a means to an end. The goal really is to learn techniques that we can apply to our own questions, to critique visuals from other scientists, and to develop our own methods. Sometimes I worry that I spend too much time getting just the right font size, line thickness, symbol size, color, or margin width. But by modifying those attributes so fastidiously we are learning how those attributes work. I’m not sure that I need 100 shades of gray or that I can see the difference between a line thickness of 0.10 and 0.15. But, looking at the nuances of these values has really been educational for me and a fun exploration. I have been forced to try things that I wouldn’t ordinarily try. As things were winding down last semester, I was listening to a Spotify playlist when a song from a family-favorite band, OK GO, came on. Seriously, if you and you kids haven’t “wasted” a night watching OK GO videos on YouTube, you’re really missing out. Anyway, this was the album art for the song that came up I thought to myself, “Wait, OK GO knows how to program in R? OK GO is interested in genomics?” Probably not. My point in sharing this humorous episode is that by looking for visuals to share with you all I have started looking for visualizations everywhere - even when it isn’t a data visualization! I’ll hold of on a 30,000-foot description of how I’d make this and instead opt for a 100,000-foot description (is that a thing?). I suspect that I’d start by creating a stacked bar plot and removing the space between the bars on the x-axis - perhaps we’d use Of course, this would take a lot of fiddling to get the right color scheme and pattern. You might be surprised to learn that there are R programmers who use R to generate art. One package that I found is As much fun as I think it would be to generate my own version of this type of art, I’ll likely pass. Part of what I actually love about the album cover is how organic and chaotic and beautiful the patterns are. That’s pretty much a theme for OK GO’s videos in general. For this album cover, I suspect someone used a turntable and dropped different colored paints. Perhaps they had different viscosities and perhaps the artist etched in channels to create the radial streaks we see. Well, I just googled it and sure enough, that’s pretty much / what they did. My hope for all of us in 2025 is that we tune our eyes to find more data visualizations in the world. Then, the fun begins with thinking through how we’d create the visual followed by actually making the visual.
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Hey folks, It turns out that I sent out last week’s newsletter a week earlier than I should have. I had every intention of posting a critique video on Monday and doing a livestream on Wednesday. Alas, I didn’t totally have control of my schedule and neither video got up. Regardless, I’m glad I sent the newsletter out last week because it got me going. Inertia is a powerful thing. If we never start - even if it’s a false start - we will never get going. Rest assured that the videos will come...
Hey folks! I’m excited to be firing up the newsletter and YouTube feed again for the academic year. I hope you all had a great summer and were able to get a lot done while enjoying the opportunity to rest a bit. This summer I was able to finally resubmit and publish a manuscript I’ve been working on for a few years to rarefaction. This is now my third paper on rarefaction. Don’t worry, it’s the same story. If you are analyzing microbiome data, please use rarefaction. This paper raised a few...
Hey folks, Earlier this week, those of us in the US celebrated Memorial Day. For many, this marks the unofficial start of summer. I suppose the clock is now ticking until Labor Day, which is the unofficial end of summer. Let me be the jerk to tell you that you have 100 days left to accomplish all of your summer goals. I suspect that for many of you writing papers and putting together conference posters and talks are on your list of goals. Generating attractive visualizations of your data is...